STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tadB-3Flp pilus assembly protein TadB; Type II secretion system protein. (297 aa)    
Predicted Functional Partners:
tadC-3
Flp pilus assembly protein TadC; Type II secretion system protein.
 
  
 0.986
cpaE-3
Flp pilus assembly protein, ATPase CpaE.
 
  
 0.971
cpaB-3
Flp pilus assembly protein CpaB; Uncharacterized protein involved in type IV pili biogenesis.
 
  
 0.971
cpaF-2
Flp pilus assembly protein, ATPase CpaF.
 
  
 0.968
cpaC-3
Flp pilus assembly protein secretin CpaC; General secretory pathway protein D; Belongs to the bacterial secretin family.
 
  
 0.947
tadD-3
Flp pilus assembly protein TadD; TPR repeats.
 
  
 0.907
tadC
Flp pilus assembly protein TadC.
 
  
 0.905
tadC-2
Flp pilus assembly protein TadC.
 
  
 0.903
cpaE
Flp pilus assembly protein ATPase CpaE.
 
  
 0.898
BAI98391.1
Putative membrane protein.
 
  
 0.895
Your Current Organism:
Sphingobium japonicum
NCBI taxonomy Id: 452662
Other names: S. japonicum UT26S, Sphingobium japonicum UT26, Sphingobium japonicum UT26S, Sphingobium japonicum str. UT26S, Sphingobium japonicum strain UT26S
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.