STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynB-4Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (544 aa)    
Predicted Functional Partners:
xynB-3
Putative beta-xylosidase; Arabinosidase (EC 3.2.1.55); Belongs to the glycosyl hydrolase 43 family.
 
  
 
0.949
uxaC
Glucuronate isomerase.
    
 0.812
exuT
MFS transporter, ACS family.
 
     0.806
BAI96763.1
Beta-1,4-xylanase.
 
  
 0.756
abfA
alpha-L-arabinosidase.
 
  
 0.709
BAI98597.1
Hypothetical protein.
 
   
 0.701
galA
Alpha-galactosidase.
 
   
 0.661
pnbA
Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family.
 
     0.627
xynB
Putative beta-xylosidase; Arabinosidase (EC 3.2.1.55); Belongs to the glycosyl hydrolase 43 family.
 
     0.606
aguA
Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.604
Your Current Organism:
Sphingobium japonicum
NCBI taxonomy Id: 452662
Other names: S. japonicum UT26S, Sphingobium japonicum UT26, Sphingobium japonicum UT26S, Sphingobium japonicum str. UT26S, Sphingobium japonicum strain UT26S
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