STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0N913Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins. (152 aa)    
Predicted Functional Partners:
A0A0E0NVV7
SAP domain-containing protein.
   
 0.998
A0A0E0P039
Pinin_SDK_memA domain-containing protein.
    
 0.996
A0A0E0NL73
RRM domain-containing protein.
   
 0.985
A0A0E0PV60
RRM domain-containing protein.
   
 0.985
A0A0E0NEQ7
Uncharacterized protein.
   
 
 0.983
A0A0E0QUK2
Uncharacterized protein.
   
 
 0.983
A0A0E0QJ96
RRM domain-containing protein.
   
 
 0.948
A0A0E0RCG1
RRM domain-containing protein.
   
 
 0.948
A0A0E0P2X2
RRM domain-containing protein.
   
 0.932
A0A0E0PH97
RRM domain-containing protein.
   
 0.932
Your Current Organism:
Oryza rufipogon
NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.