Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0NET4zf-GRF domain-containing protein. (151 aa)    
Predicted Functional Partners:
A0A0E0N097
3'-5' exonuclease domain-containing protein.
  
 0.950
A0A0E0MS50
DUF1767 domain-containing protein.
    
 0.938
A0A0E0NNF5
ERCC4 domain-containing protein.
    
 0.931
A0A0E0R4Z1
Uncharacterized protein.
    
 0.923
A0A0E0N7L5
ERCC4 domain-containing protein.
    
 0.903
A0A0E0QMY4
AAA_23 domain-containing protein.
  
 
 0.807
A0A0E0NLR7
Uncharacterized protein.
  
 0.803
A0A0E0P9D8
Uncharacterized protein.
  
 0.803
A0A0E0PAS3
Uncharacterized protein.
  
 0.803
A0A0E0PHL3
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
  
 0.803
Your Current Organism:
Oryza rufipogon
NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice
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