STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0NGI9Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. Belongs to the SFT2 family. (160 aa)    
Predicted Functional Partners:
A0A0E0MS64
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 
 0.690
A0A0E0NRV9
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
   0.483
A0A0E0NRC2
WPP domain-containing protein.
   
 
 0.470
A0A0E0NRC6
Uncharacterized protein.
   
 
 0.470
A0A0E0QAN8
WPP domain-containing protein.
   
 
 0.470
A0A0E0QXR5
WPP domain-containing protein.
   
 
 0.470
A0A0E0MTW9
DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family.
      
 0.468
A0A0E0N5H5
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 
 0.459
A0A0E0N7Z7
Uncharacterized protein.
    
 
 0.459
A0A0E0PAQ6
PCI domain-containing protein.
      
 0.444
Your Current Organism:
Oryza rufipogon
NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice
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