STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0NL41DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1059 aa)    
Predicted Functional Partners:
A0A0E0NG96
Uncharacterized protein.
   
 0.979
A0A0E0NMS6
EXOSC1 domain-containing protein.
   
 0.979
A0A0E0RG97
Uncharacterized protein.
   
 0.979
A0A0E0R7F5
Uncharacterized protein.
   
 0.978
A0A0E0N642
KH_dom_type_1 domain-containing protein.
   
 0.976
A0A0E0P428
RNase_PH domain-containing protein.
   
 0.975
A0A0E0PBN2
S1 domain-containing protein.
    
 0.975
A0A0E0Q8X2
HRDC domain-containing protein.
   
 0.953
A0A0E0QNK2
Uncharacterized protein.
   
 0.950
A0A0E0NPW8
HRDC domain-containing protein.
   
 0.946
Your Current Organism:
Oryza rufipogon
NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice
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