A0A0E0NYF7 protein (Oryza rufipogon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0NYF7

Sec3-PIP2_bind domain-containing protein. (885 aa)

Predicted Functional Partners:

A0A0E0P938

0.992

A0A0E0NL10

0.991

A0A0E0QH94

0.989

A0A0E0RFF9

0.986

A0A0E0QA18

0.965

A0A0E0P2R8

0.964

A0A0E0Q5B3

0.964

A0A0E0QMJ6

0.964

A0A0E0MW17

0.938

A0A0E0NQ25

0.936

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MW17	A0A0E0NL10	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Uncharacterized protein.	0.957
A0A0E0MW17	A0A0E0NYF7	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Sec3-PIP2_bind domain-containing protein.	0.938
A0A0E0MW17	A0A0E0P2R8	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exo84_C domain-containing protein.	0.914
A0A0E0MW17	A0A0E0P938	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.953
A0A0E0MW17	A0A0E0Q5B3	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exo84_C domain-containing protein.	0.914
A0A0E0MW17	A0A0E0QA18	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exo84_C domain-containing protein.	0.920
A0A0E0MW17	A0A0E0QH94	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Sec8_exocyst domain-containing protein.	0.958
A0A0E0MW17	A0A0E0QMJ6	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Uncharacterized protein.	0.882
A0A0E0MW17	A0A0E0RFF9	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Uncharacterized protein.	0.920
A0A0E0NL10	A0A0E0MW17	Uncharacterized protein.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.957
A0A0E0NL10	A0A0E0NQ25	Uncharacterized protein.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.953
A0A0E0NL10	A0A0E0NYF7	Uncharacterized protein.	Sec3-PIP2_bind domain-containing protein.	0.991
A0A0E0NL10	A0A0E0P2R8	Uncharacterized protein.	Exo84_C domain-containing protein.	0.984
A0A0E0NL10	A0A0E0P938	Uncharacterized protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.999
A0A0E0NL10	A0A0E0Q5B3	Uncharacterized protein.	Exo84_C domain-containing protein.	0.984
A0A0E0NL10	A0A0E0QA18	Uncharacterized protein.	Exo84_C domain-containing protein.	0.984
A0A0E0NL10	A0A0E0QH94	Uncharacterized protein.	Sec8_exocyst domain-containing protein.	0.999
A0A0E0NL10	A0A0E0QMJ6	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A0E0NL10	A0A0E0RFF9	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0E0NQ25	A0A0E0NL10	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Uncharacterized protein.	0.953