STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0P3Z8WD_REPEATS_REGION domain-containing protein. (561 aa)    
Predicted Functional Partners:
A0A0E0PZZ8
Tr-type G domain-containing protein.
   
 0.979
A0A0E0N972
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.971
A0A0E0Q4I0
Small nuclear ribonucleoprotein-associated protein.
   
  0.949
A0A0E0PHY9
MPN domain-containing protein.
   
 0.946
A0A0E0PU02
MPN domain-containing protein.
   
 0.946
A0A0E0MUA0
PRP1_N domain-containing protein.
   
 0.944
A0A0E0R0Z0
Uncharacterized protein.
   
 0.944
A0A0E0N830
Sm domain-containing protein.
   
 0.936
A0A0E0PKL0
Small nuclear ribonucleoprotein Sm D2.
   
 0.936
A0A0E0P099
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 0.930
Your Current Organism:
Oryza rufipogon
NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice
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