A0A0E0P7B5 protein (Oryza rufipogon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0P7B5

Uncharacterized protein. (145 aa)

Predicted Functional Partners:

A0A0E0NNP0

0.991

A0A0E0NJG7

0.971

A0A0E0NKG7

0.971

A0A0E0R335

0.966

A0A0E0RCL7

0.966

A0A0E0N6R3

0.954

A0A0E0NME8

0.954

A0A0E0PU03

0.954

A0A0E0RF32

0.946

A0A0E0NEI5

0.943

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0N6R3	A0A0E0NEI5	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	Uncharacterized protein.	0.865
A0A0E0N6R3	A0A0E0NJG7	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.939
A0A0E0N6R3	A0A0E0NKG7	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	Rhodanese domain-containing protein.	0.904
A0A0E0N6R3	A0A0E0NNP0	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	Alpha_adaptinC2 domain-containing protein.	0.516
A0A0E0N6R3	A0A0E0P7B5	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	Uncharacterized protein.	0.954
A0A0E0N6R3	A0A0E0R335	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	Clathrin-link domain-containing protein.	0.931
A0A0E0N6R3	A0A0E0RCL7	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.931
A0A0E0N6R3	A0A0E0RF32	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.910
A0A0E0NEI5	A0A0E0N6R3	Uncharacterized protein.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.865
A0A0E0NEI5	A0A0E0NJG7	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.975
A0A0E0NEI5	A0A0E0NKG7	Uncharacterized protein.	Rhodanese domain-containing protein.	0.975
A0A0E0NEI5	A0A0E0NME8	Uncharacterized protein.	AP-1 complex subunit gamma.	0.865
A0A0E0NEI5	A0A0E0NNP0	Uncharacterized protein.	Alpha_adaptinC2 domain-containing protein.	0.991
A0A0E0NEI5	A0A0E0P7B5	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A0E0NEI5	A0A0E0PU03	Uncharacterized protein.	AP-1 complex subunit gamma.	0.865
A0A0E0NEI5	A0A0E0R335	Uncharacterized protein.	Clathrin-link domain-containing protein.	0.829
A0A0E0NEI5	A0A0E0RCL7	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.829
A0A0E0NJG7	A0A0E0N6R3	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.	0.939
A0A0E0NJG7	A0A0E0NEI5	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.975
A0A0E0NJG7	A0A0E0NME8	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	AP-1 complex subunit gamma.	0.936