STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0PBG6Uncharacterized protein. (811 aa)    
Predicted Functional Partners:
A0A0E0QAU9
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 0.990
A0A0E0P3G9
PUM-HD domain-containing protein.
   
 
 0.988
A0A0E0Q7F0
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.988
A0A0E0Q8R7
WD_REPEATS_REGION domain-containing protein.
   
 
 0.988
A0A0E0P2P4
Uncharacterized protein.
   
 
 0.987
A0A0E0P3B0
Uncharacterized protein.
   
 
 0.987
A0A0E0P0S9
Uncharacterized protein.
  
 
0.984
A0A0E0P001
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.983
A0A0E0QMW8
CBF domain-containing protein.
   
 
 0.982
A0A0E0NXW4
Uncharacterized protein.
   
 0.977
Your Current Organism:
Oryza rufipogon
NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice
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