STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0PJ77PNP_UDP_1 domain-containing protein. (404 aa)    
Predicted Functional Partners:
A0A0E0R823
Adenosylhomocysteinase.
    
 0.912
A0A0E0PIC1
Pribosyltran domain-containing protein.
    
 0.864
A0A0E0MZ66
Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
    
  0.863
A0A0E0Q5E2
SurE domain-containing protein.
     
 0.860
A0A0E0NU71
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.854
A0A0E0QTZ5
Uncharacterized protein.
     
 0.849
A0A0E0NHH2
Uncharacterized protein.
    
 0.848
A0A0E0NHQ7
Pribosyltran domain-containing protein.
   
 0.807
A0A0E0PB92
Pribosyltran domain-containing protein.
   
 0.807
A0A0E0Q8B1
Pribosyltran domain-containing protein.
   
 0.807
Your Current Organism:
Oryza rufipogon
NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice
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