A0A0E0PL43 protein (Oryza rufipogon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0PL43

RanBD1 domain-containing protein. (472 aa)

Predicted Functional Partners:

A0A0E0NV13

0.939

A0A0E0Q6U9

0.925

A0A0E0MZ60

0.924

A0A0E0PZU2

0.924

A0A0E0QUE8

0.909

A0A0E0PME8

0.907

A0A0E0PQN0

0.907

A0A0E0NY13

0.897

A0A0E0MZD1

0.890

A0A0E0NRU0

0.887

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MZ60	A0A0E0MZD1	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.749
A0A0E0MZ60	A0A0E0NRU0	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.701
A0A0E0MZ60	A0A0E0NV13	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Nuclear pore protein.	0.766
A0A0E0MZ60	A0A0E0NY13	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.718
A0A0E0MZ60	A0A0E0PL43	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	RanBD1 domain-containing protein.	0.924
A0A0E0MZ60	A0A0E0PME8	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.978
A0A0E0MZ60	A0A0E0PQN0	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	WPP domain-containing protein.	0.978
A0A0E0MZ60	A0A0E0PZU2	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.866
A0A0E0MZ60	A0A0E0Q6U9	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Nup54 domain-containing protein.	0.821
A0A0E0MZ60	A0A0E0QUE8	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Uncharacterized protein.	0.941
A0A0E0MZD1	A0A0E0MZ60	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.749
A0A0E0MZD1	A0A0E0NRU0	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.984
A0A0E0MZD1	A0A0E0NV13	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Nuclear pore protein.	0.998
A0A0E0MZD1	A0A0E0NY13	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.995
A0A0E0MZD1	A0A0E0PL43	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	RanBD1 domain-containing protein.	0.890
A0A0E0MZD1	A0A0E0PME8	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.824
A0A0E0MZD1	A0A0E0PQN0	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	WPP domain-containing protein.	0.824
A0A0E0MZD1	A0A0E0PZU2	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.749
A0A0E0MZD1	A0A0E0Q6U9	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Nup54 domain-containing protein.	0.991
A0A0E0MZD1	A0A0E0QUE8	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.995