A0A0E0PYE4 protein (Oryza rufipogon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0PYE4

Uncharacterized protein. (174 aa)

Predicted Functional Partners:

A0A0E0NP79

0.475

A0A0E0PBP2

0.470

A0A0E0P5N1

0.467

A0A0E0P5M8

0.461

A0A0E0NA41

0.451

A0A0E0RD80

0.447

A0A0E0QSK8

0.442

A0A0E0Q2L7

0.440

A0A0E0N2U8

0.439

A0A0E0NBJ7

0.437

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0N2U8	A0A0E0PYE4	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A0E0NA41	A0A0E0PYE4	Uncharacterized protein.	Uncharacterized protein.	0.451
A0A0E0NBJ7	A0A0E0PYE4	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.437
A0A0E0NBJ7	A0A0E0Q2L7	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.616
A0A0E0NP79	A0A0E0PYE4	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.475
A0A0E0NP79	A0A0E0Q2L7	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.618
A0A0E0P5M8	A0A0E0PYE4	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.461
A0A0E0P5M8	A0A0E0Q2L7	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.606
A0A0E0P5N1	A0A0E0PYE4	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.467
A0A0E0P5N1	A0A0E0Q2L7	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.611
A0A0E0PBP2	A0A0E0PYE4	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.470
A0A0E0PBP2	A0A0E0Q2L7	Knot1 domain-containing protein; Belongs to the DEFL family.	Uncharacterized protein.	0.614
A0A0E0PYE4	A0A0E0N2U8	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A0E0PYE4	A0A0E0NA41	Uncharacterized protein.	Uncharacterized protein.	0.451
A0A0E0PYE4	A0A0E0NBJ7	Uncharacterized protein.	Knot1 domain-containing protein; Belongs to the DEFL family.	0.437
A0A0E0PYE4	A0A0E0NP79	Uncharacterized protein.	Knot1 domain-containing protein; Belongs to the DEFL family.	0.475
A0A0E0PYE4	A0A0E0P5M8	Uncharacterized protein.	Knot1 domain-containing protein; Belongs to the DEFL family.	0.461
A0A0E0PYE4	A0A0E0P5N1	Uncharacterized protein.	Knot1 domain-containing protein; Belongs to the DEFL family.	0.467
A0A0E0PYE4	A0A0E0PBP2	Uncharacterized protein.	Knot1 domain-containing protein; Belongs to the DEFL family.	0.470
A0A0E0PYE4	A0A0E0Q2L7	Uncharacterized protein.	Uncharacterized protein.	0.440