STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0Q1R9EF-hand domain-containing protein. (125 aa)    
Predicted Functional Partners:
A0A0E0QJ91
BHD_3 domain-containing protein.
    
 0.920
A0A0E0PFC8
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.904
A0A0E0N6W0
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
   
 
 0.836
A0A0E0QQW2
PCI domain-containing protein.
    
 
 0.770
A0A0E0NV29
Uncharacterized protein.
    
 
 0.766
A0A0E0QBZ7
PCI domain-containing protein.
    
 
 0.766
A0A0E0N3R6
GHMP_kinases_N domain-containing protein.
     
 0.765
A0A0E0QE43
Uncharacterized protein; Belongs to the actin family.
    
 0.701
A0A0E0P103
CYCLIN domain-containing protein; Belongs to the cyclin family.
   
 0.688
A0A0E0NAQ3
Uncharacterized protein.
   
 0.680
Your Current Organism:
Oryza rufipogon
NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice
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