STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0Q1T4Uncharacterized protein. (554 aa)    
Predicted Functional Partners:
A0A0E0NP59
Uncharacterized protein.
    
 0.695
A0A0E0N7L5
ERCC4 domain-containing protein.
    
 0.656
A0A0E0N972
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.601
A0A0E0PG24
Protein kinase domain-containing protein.
   
 0.590
A0A0E0NNF5
ERCC4 domain-containing protein.
    
 0.587
A0A0E0R531
DNA polymerase.
   
 0.575
A0A0E0N0W6
Uncharacterized protein; Belongs to the ATP-dependent DNA ligase family.
     
 0.522
A0A0E0PDB1
Uncharacterized protein.
    
 0.515
A0A0E0NTS1
CHCH domain-containing protein.
   
 
 0.499
A0A0E0NQV9
Uncharacterized protein.
    
 
 0.485
Your Current Organism:
Oryza rufipogon
NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.