STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0Q5H6FCP1 homology domain-containing protein. (461 aa)    
Predicted Functional Partners:
A0A0E0NSI9
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.866
A0A0E0QX34
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.866
A0A0E0PNL7
LNS2 domain-containing protein.
    
 0.777
A0A0E0RAV5
LNS2 domain-containing protein.
    
 0.777
A0A0E0NSK5
Uncharacterized protein.
    
 0.734
A0A0E0N8V7
RPOL4c domain-containing protein.
    
 0.691
A0A0E0NKA7
RPOL4c domain-containing protein.
    
 0.691
A0A0E0Q4M5
RNA_pol_L_2 domain-containing protein.
    
 0.689
A0A0E0N328
TFIIF_beta domain-containing protein.
    
 0.687
A0A0E0PPT1
TFIIF_beta domain-containing protein.
    
 0.687
Your Current Organism:
Oryza rufipogon
NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice
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