STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0QNI3Uncharacterized protein. (826 aa)    
Predicted Functional Partners:
A0A0E0P2Y7
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.994
A0A0E0N972
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.990
A0A0E0NFD7
Uncharacterized protein.
    
 0.990
A0A0E0PZZ8
Tr-type G domain-containing protein.
   
 0.990
A0A0E0QEH1
Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.
    
 0.987
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.985
A0A0E0N5H9
Sm domain-containing protein; Belongs to the BolA/IbaG family.
    
 0.985
A0A0E0NKH3
Nop domain-containing protein.
   
 0.983
A0A0E0PCG3
Nop domain-containing protein.
   
 0.983
A0A0E0Q3V9
Nop domain-containing protein.
   
 0.983
Your Current Organism:
Oryza rufipogon
NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice
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