STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0R4W5RRM domain-containing protein. (597 aa)    
Predicted Functional Partners:
A0A0E0RJ00
TPR_REGION domain-containing protein.
   
 0.990
A0A0E0Q1M1
Uncharacterized protein.
    
 0.980
A0A0E0QVA9
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.964
A0A0E0NL73
RRM domain-containing protein.
  
 0.955
A0A0E0N7N4
WD_REPEATS_REGION domain-containing protein.
    
 0.954
A0A0E0NBR2
Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.
   
 0.945
A0A0E0NU32
Fip1 domain-containing protein.
   
 0.944
A0A0E0P0N9
Fip1 domain-containing protein.
   
 0.944
A0A0E0NG33
Myb-like domain-containing protein.
   
 0.940
A0A0E0P415
Uncharacterized protein.
   
 0.940
Your Current Organism:
Oryza rufipogon
NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice
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