STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GATBGlutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily. (1064 aa)    
Predicted Functional Partners:
A0A0E0MRH0
AA_TRNA_LIGASE_II domain-containing protein.
 
 0.999
GATA
Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
 
 0.998
A0A0E0MWF7
Uncharacterized protein.
  
 0.992
A0A0E0Q8B4
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.992
A0A0E0RGF2
Uncharacterized protein.
  
 0.992
A0A0E0MSD1
Uncharacterized protein.
  
 0.991
A0A0E0PIC7
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.991
A0A0E0NL46
TPR_REGION domain-containing protein.
 
 0.989
A0A0E0P090
TPR_REGION domain-containing protein.
 
 0.989
A0A0E0P4B7
Amidase domain-containing protein.
 
 0.987
Your Current Organism:
Oryza rufipogon
NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice
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