STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0RD46FHA domain-containing protein. (222 aa)    
Predicted Functional Partners:
A0A0E0R4Z1
Uncharacterized protein.
    
 0.508
A0A0E0NNF5
ERCC4 domain-containing protein.
    
  0.502
A0A0E0R1G2
HHH_2 domain-containing protein.
    
  0.489
A0A0E0P0Q6
Uncharacterized protein.
    
  0.485
A0A0E0PFA6
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
    
 0.474
A0A0E0MSK5
SANT domain-containing protein.
    
 0.461
A0A0E0NYN8
DIRP domain-containing protein.
    
 0.461
A0A0E0N7L5
ERCC4 domain-containing protein.
    
  0.454
A0A0E0NZB5
dUTPase domain-containing protein.
    
 0.428
A0A0E0PL92
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
 0.428
Your Current Organism:
Oryza rufipogon
NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice
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