Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lfee_0046 | Lfee_0048 | Lfee_0046 | Lfee_0048 | Carbohydrate-selective porin, OprB family. | Hypothetical protein. | 0.549 |
Lfee_0046 | Lfee_0353 | Lfee_0046 | Lfee_0353 | Carbohydrate-selective porin, OprB family. | Hypothetical protein. | 0.758 |
Lfee_0046 | Lfee_2017 | Lfee_0046 | Lfee_2017 | Carbohydrate-selective porin, OprB family. | Ankyrin repeats (3 copies). | 0.769 |
Lfee_0046 | fmdA | Lfee_0046 | Lfee_0047 | Carbohydrate-selective porin, OprB family. | Amidase. | 0.784 |
Lfee_0048 | Lfee_0046 | Lfee_0048 | Lfee_0046 | Hypothetical protein. | Carbohydrate-selective porin, OprB family. | 0.549 |
Lfee_0048 | fmdA | Lfee_0048 | Lfee_0047 | Hypothetical protein. | Amidase. | 0.752 |
Lfee_0353 | Lfee_0046 | Lfee_0353 | Lfee_0046 | Hypothetical protein. | Carbohydrate-selective porin, OprB family. | 0.758 |
Lfee_0353 | Lfee_2017 | Lfee_0353 | Lfee_2017 | Hypothetical protein. | Ankyrin repeats (3 copies). | 0.795 |
Lfee_0353 | fmdA | Lfee_0353 | Lfee_0047 | Hypothetical protein. | Amidase. | 0.613 |
Lfee_0766 | fmdA | Lfee_0766 | Lfee_0047 | Putative hydrolase. | Amidase. | 0.630 |
Lfee_0766 | hutG | Lfee_0766 | Lfee_0081 | Putative hydrolase. | Formiminoglutamase; Catalyzes the conversion of N-formimidoyl-L-glutamate to L- glutamate and formamide; Belongs to the arginase family. | 0.618 |
Lfee_0766 | kynB | Lfee_0766 | Lfee_0167 | Putative hydrolase. | Metal-dependent hydrolase. | 0.560 |
Lfee_0766 | prpB | Lfee_0766 | Lfee_3117 | Putative hydrolase. | 2-methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family. | 0.567 |
Lfee_1947 | fmdA | Lfee_1947 | Lfee_0047 | Putative Mg(2+) transport ATPase. | Amidase. | 0.599 |
Lfee_2017 | Lfee_0046 | Lfee_2017 | Lfee_0046 | Ankyrin repeats (3 copies). | Carbohydrate-selective porin, OprB family. | 0.769 |
Lfee_2017 | Lfee_0353 | Lfee_2017 | Lfee_0353 | Ankyrin repeats (3 copies). | Hypothetical protein. | 0.795 |
Lfee_2017 | fmdA | Lfee_2017 | Lfee_0047 | Ankyrin repeats (3 copies). | Amidase. | 0.609 |
fmdA | Lfee_0046 | Lfee_0047 | Lfee_0046 | Amidase. | Carbohydrate-selective porin, OprB family. | 0.784 |
fmdA | Lfee_0048 | Lfee_0047 | Lfee_0048 | Amidase. | Hypothetical protein. | 0.752 |
fmdA | Lfee_0353 | Lfee_0047 | Lfee_0353 | Amidase. | Hypothetical protein. | 0.613 |
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