STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_0116Hypothetical protein. (419 aa)    
Predicted Functional Partners:
hmgA
Homogentisate 1,2-dioxygenase.
  
 0.844
Lfee_0762
Acetyl/propionyl-CoA carboxylase, beta subunit.
  
 
 0.724
Lfee_0117
Phosphoesterase.
       0.671
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.638
tycC_2
Peptide synthetase, non-ribosomal.
    
 0.571
cfiA_1
Oxaloacetate decarboxylase subunit alpha.
    
  0.549
Lfee_2374
Acetyltransferase.
     
 0.504
Lfee_1859
Polyketide synthase module.
     
 0.487
Lfee_0115
Hypothetical protein.
       0.470
glbN
Hemoglobin (protozoan/cyanobacterial globin family).
  
     0.457
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.