Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_0138Hypothetical protein. (379 aa)    
Predicted Functional Partners:
rtxA
Hypothetical protein.
 
  0.958
apxIB
Toxin secretion ATP binding protein.
 
  
 0.725
Lfee_0140
Hypothetical protein.
       0.723
bepC
Agglutination protein.
 
  
 0.699
Lfee_1238
Hypothetical protein.
   
  0.678
tolC_2
Outer membrane protein TolC.
  
  
 0.671
pksJ
Polyketide synthase module.
  
  
 0.669
lssD
Secretion system protein D.
 
  
 0.641
proA_2
Zinc metalloproteinase precursor; Extracellular zinc metalloprotease.
   
  
 0.592
Lfee_2351
Hypothetical protein; Belongs to the UPF0276 family.
   
    0.589
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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