Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
celEChitinase. (746 aa)    
Predicted Functional Partners:
chiD
Chitinase.
     
 0.848
chiA1
Chitinase A1 precursor.
 
  
 0.802
celC
Endoglucanase.
  
 0.784
tesA
Esterase TesA precursor.
  
 0.764
pksJ
Polyketide synthase module.
 
  
 0.734
Lfee_2530
Membrane protein.
   
 
 0.523
truD
Hydrogenase; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
       0.520
Lfee_1111
Substrate of the Dot/Icm secretion system.
   
 
  0.507
Lfee_0013
Oxidoreductase.
  
     0.505
Lfee_1852
Hypothetical protein.
  
     0.471
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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