Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lfee_0231FAD dependent oxidoreductase. (397 aa)    
Predicted Functional Partners:
Lfee_0230
Methyltransferase.
 
    0.964
Lfee_0097
Naringenin-chalcone synthase.
 
  
 0.742
Lfee_0232
L-gulono-gamma-lactone oxidase.
 
     0.720
etfB
Electron transfer flavoprotein subunit beta.
  
 
 0.705
Lfee_1292
Electron transferring flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.672
pksJ
Polyketide synthase module.
  
 
 0.626
chiD
Chitinase.
  
     0.617
Lfee_1791
Hypothetical protein.
 
  
 0.617
Lfee_1397
Fatty acid desaturase.
  
 
 0.593
Lfee_2176
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.593
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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