STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndoANaphthalene 1,2-dioxygenase system ferredoxin subunit. (117 aa)    
Predicted Functional Partners:
ndoR
Xylene monooxygenase.
    
 0.826
fadH
2,4-dienoyl-CoA reductase FadH1.
     
 0.785
kshA
Rieske 2Fe-2S domain protein.
 
  
 0.731
coxB
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
 0.724
pta
Phosphate acetyl/butaryl transferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.677
pdhB_2
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.
     
 0.669
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.666
fmdA
Amidase.
  
  
  0.656
Lfee_0804
Phosphoadenosine phosphosulfate reductase family protein.
     
 0.602
fpr
Phenol hydroxylase.
   
 
 0.600
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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