yhgF protein (Legionella feeleii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

yhgF

Transcriptional accessory protein. (779 aa)

Predicted Functional Partners:

yciA

0.860

Lfee_0348

0.860

rpoA

0.844

rpoB

0.837

rpoZ

0.817

Lfee_2483

0.815

glmS

0.656

tpm

0.570

Lfee_0349

0.466

Lfee_0330

0.455

Your Current Organism:

Legionella feeleii

NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lfee_0330	Lfee_2483	Lfee_0330	Lfee_2483	Hypothetical protein.	SET domain protein.	0.468
Lfee_0330	rpoA	Lfee_0330	Lfee_2446	Hypothetical protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.691
Lfee_0330	rpoB	Lfee_0330	Lfee_0999	Hypothetical protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.492
Lfee_0330	rpoZ	Lfee_0330	Lfee_2275	Hypothetical protein.	RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.453
Lfee_0330	yhgF	Lfee_0330	Lfee_0346	Hypothetical protein.	Transcriptional accessory protein.	0.455
Lfee_0348	Lfee_0349	Lfee_0348	Lfee_0349	Hypothetical protein.	PAP2 superfamily protein.	0.470
Lfee_0348	glmS	Lfee_0348	Lfee_0344	Hypothetical protein.	Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	0.656
Lfee_0348	tpm	Lfee_0348	Lfee_0345	Hypothetical protein.	Thiopurine S-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family.	0.570
Lfee_0348	yciA	Lfee_0348	Lfee_0347	Hypothetical protein.	acyl-CoA thioester hydrolase.	0.860
Lfee_0348	yhgF	Lfee_0348	Lfee_0346	Hypothetical protein.	Transcriptional accessory protein.	0.860
Lfee_0349	Lfee_0348	Lfee_0349	Lfee_0348	PAP2 superfamily protein.	Hypothetical protein.	0.470
Lfee_0349	yciA	Lfee_0349	Lfee_0347	PAP2 superfamily protein.	acyl-CoA thioester hydrolase.	0.462
Lfee_0349	yhgF	Lfee_0349	Lfee_0346	PAP2 superfamily protein.	Transcriptional accessory protein.	0.466
Lfee_2483	Lfee_0330	Lfee_2483	Lfee_0330	SET domain protein.	Hypothetical protein.	0.468
Lfee_2483	rpoA	Lfee_2483	Lfee_2446	SET domain protein.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.824
Lfee_2483	rpoB	Lfee_2483	Lfee_0999	SET domain protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.823
Lfee_2483	rpoZ	Lfee_2483	Lfee_2275	SET domain protein.	RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.792
Lfee_2483	yhgF	Lfee_2483	Lfee_0346	SET domain protein.	Transcriptional accessory protein.	0.815
glmS	Lfee_0348	Lfee_0344	Lfee_0348	Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	Hypothetical protein.	0.656
glmS	tpm	Lfee_0344	Lfee_0345	Glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.	Thiopurine S-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. TPMT family.	0.753