Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_0353Hypothetical protein. (164 aa)    
Predicted Functional Partners:
Lfee_2374
Acetyltransferase.
  
 0.852
Lfee_2017
Ankyrin repeats (3 copies).
  
 
  0.837
cpo
Chloroperoxidase.
 
     0.835
Lfee_0012
Hypothetical protein.
  
     0.772
Lfee_3134
Serine/threonine protein kinase.
  
     0.768
Lfee_1342
Phosphotransferase enzyme family protein.
  
     0.766
Lfee_0046
Carbohydrate-selective porin, OprB family.
  
     0.758
Lfee_0387
GNAT family acetyltransferase.
  
     0.750
Lfee_0226
Trypsin.
  
     0.742
Lfee_2531
Hypothetical protein.
  
     0.732
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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