Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chiDChitinase. (780 aa)    
Predicted Functional Partners:
chiA1
Chitinase A1 precursor.
 
 0.996
celE
Chitinase.
     
 0.848
celC
Endoglucanase.
    
 0.825
Lfee_1300
Two component response regulator.
  
   
 0.781
Lfee_0232
L-gulono-gamma-lactone oxidase.
  
     0.770
Lfee_0182
Glycosyl hydrolase.
     
 0.763
Lfee_0228
Putative N-hydroxyarylamine O-acetyltransferase.
  
     0.763
Lfee_1695
Hypothetical protein.
  
     0.763
ybbD
N-acetyl-beta-glucosaminidase.
     
 0.763
Lfee_0012
Hypothetical protein.
  
 
  0.756
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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