Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lfee_0330 | Lfee_0331 | Lfee_0330 | Lfee_0331 | Hypothetical protein. | TPR repeat containing protein. | 0.995 |
Lfee_0330 | Lfee_0420 | Lfee_0330 | Lfee_0420 | Hypothetical protein. | Hypothetical protein. | 0.833 |
Lfee_0330 | Lfee_1321 | Lfee_0330 | Lfee_1321 | Hypothetical protein. | Metallo-beta-lactamase superfamily protein. | 0.678 |
Lfee_0330 | alaS | Lfee_0330 | Lfee_0837 | Hypothetical protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.947 |
Lfee_0330 | apaH | Lfee_0330 | Lfee_1772 | Hypothetical protein. | Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | 0.585 |
Lfee_0330 | hdaH | Lfee_0330 | Lfee_3163 | Hypothetical protein. | Histone deacetylase-like amidohydrolase. | 0.629 |
Lfee_0331 | Lfee_0330 | Lfee_0331 | Lfee_0330 | TPR repeat containing protein. | Hypothetical protein. | 0.995 |
Lfee_0331 | Lfee_0420 | Lfee_0331 | Lfee_0420 | TPR repeat containing protein. | Hypothetical protein. | 0.854 |
Lfee_0331 | Lfee_1321 | Lfee_0331 | Lfee_1321 | TPR repeat containing protein. | Metallo-beta-lactamase superfamily protein. | 0.678 |
Lfee_0331 | alaS | Lfee_0331 | Lfee_0837 | TPR repeat containing protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.947 |
Lfee_0331 | apaH | Lfee_0331 | Lfee_1772 | TPR repeat containing protein. | Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | 0.585 |
Lfee_0331 | hdaH | Lfee_0331 | Lfee_3163 | TPR repeat containing protein. | Histone deacetylase-like amidohydrolase. | 0.629 |
Lfee_0420 | Lfee_0330 | Lfee_0420 | Lfee_0330 | Hypothetical protein. | Hypothetical protein. | 0.833 |
Lfee_0420 | Lfee_0331 | Lfee_0420 | Lfee_0331 | Hypothetical protein. | TPR repeat containing protein. | 0.854 |
Lfee_0420 | Lfee_1321 | Lfee_0420 | Lfee_1321 | Hypothetical protein. | Metallo-beta-lactamase superfamily protein. | 0.943 |
Lfee_0420 | Lfee_1396 | Lfee_0420 | Lfee_1396 | Hypothetical protein. | RNA binding protein, cold-inducible rrm. | 0.812 |
Lfee_0420 | Lfee_1678 | Lfee_0420 | Lfee_1678 | Hypothetical protein. | Methyltransferase. | 0.833 |
Lfee_0420 | alaS | Lfee_0420 | Lfee_0837 | Hypothetical protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.935 |
Lfee_0420 | apaH | Lfee_0420 | Lfee_1772 | Hypothetical protein. | Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | 0.877 |
Lfee_0420 | gpmI | Lfee_0420 | Lfee_2209 | Hypothetical protein. | Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.867 |
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