STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phaB_1Acetyoacetyl CoA reductase. (262 aa)    
Predicted Functional Partners:
tycC_2
Peptide synthetase, non-ribosomal.
  
 0.835
Lfee_1030
SAM-dependent O-methyltransferase.
 
  
   0.818
Lfee_2374
Acetyltransferase.
  
 0.756
pksJ
Polyketide synthase module.
  
 0.733
ybbO_2
Oxidoreductase with NAD(P)-binding Rossmann-fold domain protein.
  
     0.672
fabD
Malonyl CoA-ACP transacylase.
  
 0.652
yueD_1
Sepiapterin reductase.
  
     0.631
tycC_1
Peptide synthetase, non-ribosomal; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.613
ndoR
Xylene monooxygenase.
  
 0.613
fabF_2
3-oxoacyl-ACP synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
 0.605
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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