STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_0494Extracellular solute-binding protein. (723 aa)    
Predicted Functional Partners:
gsiD
Peptide ABC transporter permease.
 
 0.999
dppB
Peptide ABC transporter permease.
 
 0.998
gsiA
ABC dipeptide/oligopeptide/nickel transport, ATPase component; Belongs to the ABC transporter superfamily.
 
 
  0.872
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
    0.806
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
  
  
 0.627
Lfee_2593
Hypothetical protein.
  
 0.618
Lfee_2596
WGR domain protein.
  
 0.618
Lfee_1205
Hypothetical protein.
  
     0.403
Lfee_0005
UVB-resistance protein UVR8.
    
  0.402
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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