STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_0547Periplasmic protein. (232 aa)    
Predicted Functional Partners:
csrD
Two component histidine kinase.
 
 
 0.987
bepC
Agglutination protein.
 
   
 0.970
lssD
Secretion system protein D.
 
   
 0.790
apxIB
Toxin secretion ATP binding protein.
 
   
 0.785
Lfee_0204
Hypothetical protein.
 
     0.763
lytM
Peptidase, M23/M37 family.
       0.740
xseA
Exonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.740
Lfee_0543
Putative rhomboid family protein.
       0.725
rtxA-2
Structural toxin protein RtxA.
 
     0.719
Lfee_0138
Hypothetical protein.
 
   
 0.585
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.