Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lfee_0138 | Lfee_0547 | Lfee_0138 | Lfee_0547 | Hypothetical protein. | Periplasmic protein. | 0.579 |
Lfee_0138 | aprE | Lfee_0138 | Lfee_2133 | Hypothetical protein. | Serine metalloprotease. | 0.508 |
Lfee_0138 | apxIB | Lfee_0138 | Lfee_3132 | Hypothetical protein. | Toxin secretion ATP binding protein. | 0.697 |
Lfee_0138 | bepC | Lfee_0138 | Lfee_0546 | Hypothetical protein. | Agglutination protein. | 0.647 |
Lfee_0138 | chiD | Lfee_0138 | Lfee_0395 | Hypothetical protein. | Chitinase. | 0.506 |
Lfee_0138 | lssD | Lfee_0138 | Lfee_3131 | Hypothetical protein. | Secretion system protein D. | 0.589 |
Lfee_0138 | rtxA-2 | Lfee_0138 | Lfee_0549 | Hypothetical protein. | Structural toxin protein RtxA. | 0.561 |
Lfee_0547 | Lfee_0138 | Lfee_0547 | Lfee_0138 | Periplasmic protein. | Hypothetical protein. | 0.579 |
Lfee_0547 | apxIB | Lfee_0547 | Lfee_3132 | Periplasmic protein. | Toxin secretion ATP binding protein. | 0.770 |
Lfee_0547 | bepC | Lfee_0547 | Lfee_0546 | Periplasmic protein. | Agglutination protein. | 0.956 |
Lfee_0547 | lssD | Lfee_0547 | Lfee_3131 | Periplasmic protein. | Secretion system protein D. | 0.777 |
Lfee_0547 | rtxA-2 | Lfee_0547 | Lfee_0549 | Periplasmic protein. | Structural toxin protein RtxA. | 0.719 |
Lfee_2835 | rtxA-2 | Lfee_2835 | Lfee_0549 | Hypothetical protein. | Structural toxin protein RtxA. | 0.580 |
aprE | Lfee_0138 | Lfee_2133 | Lfee_0138 | Serine metalloprotease. | Hypothetical protein. | 0.508 |
aprE | chiD | Lfee_2133 | Lfee_0395 | Serine metalloprotease. | Chitinase. | 0.684 |
aprE | ftsK | Lfee_2133 | Lfee_3037 | Serine metalloprotease. | Cell division protein FtsK. | 0.657 |
aprE | rtxA-2 | Lfee_2133 | Lfee_0549 | Serine metalloprotease. | Structural toxin protein RtxA. | 0.706 |
apxIB | Lfee_0138 | Lfee_3132 | Lfee_0138 | Toxin secretion ATP binding protein. | Hypothetical protein. | 0.697 |
apxIB | Lfee_0547 | Lfee_3132 | Lfee_0547 | Toxin secretion ATP binding protein. | Periplasmic protein. | 0.770 |
apxIB | bepC | Lfee_3132 | Lfee_0546 | Toxin secretion ATP binding protein. | Agglutination protein. | 0.809 |
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