asg_2 protein (Legionella feeleii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

asg_2

L-asparaginase I. (341 aa)

Predicted Functional Partners:

Lfee_0574

0.846

Lfee_0974

0.761

Lfee_0575

0.747

lysAC_1

0.676

asg_1

0.577

glmS

0.542

lysAC_2

0.541

panD

0.540

ggt

0.527

Lfee_2003

0.525

Your Current Organism:

Legionella feeleii

NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lfee_0574	Lfee_0575	Lfee_0574	Lfee_0575	Hypothetical protein.	Hypothetical protein.	0.774
Lfee_0574	asg_2	Lfee_0574	Lfee_0573	Hypothetical protein.	L-asparaginase I.	0.846
Lfee_0575	Lfee_0574	Lfee_0575	Lfee_0574	Hypothetical protein.	Hypothetical protein.	0.774
Lfee_0575	Lfee_0974	Lfee_0575	Lfee_0974	Hypothetical protein.	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.496
Lfee_0575	asg_2	Lfee_0575	Lfee_0573	Hypothetical protein.	L-asparaginase I.	0.747
Lfee_0974	Lfee_0575	Lfee_0974	Lfee_0575	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Hypothetical protein.	0.496
Lfee_0974	Lfee_2003	Lfee_0974	Lfee_2003	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Aspartate aminotransferase.	0.875
Lfee_0974	asg_1	Lfee_0974	Lfee_0309	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	L-asparaginase I.	0.761
Lfee_0974	asg_2	Lfee_0974	Lfee_0573	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	L-asparaginase I.	0.761
Lfee_0974	ggt	Lfee_0974	Lfee_0601	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Gamma-glutamyltranspeptidase.	0.877
Lfee_2003	Lfee_0974	Lfee_2003	Lfee_0974	Aspartate aminotransferase.	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.875
Lfee_2003	asg_1	Lfee_2003	Lfee_0309	Aspartate aminotransferase.	L-asparaginase I.	0.849
Lfee_2003	asg_2	Lfee_2003	Lfee_0573	Aspartate aminotransferase.	L-asparaginase I.	0.525
Lfee_2003	lysAC_1	Lfee_2003	Lfee_0474	Aspartate aminotransferase.	Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.935
Lfee_2003	lysAC_2	Lfee_2003	Lfee_0838	Aspartate aminotransferase.	Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the aspartokinase family.	0.862
Lfee_2003	panD	Lfee_2003	Lfee_2460	Aspartate aminotransferase.	Aspartate alpha-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.	0.857
asg_1	Lfee_0974	Lfee_0309	Lfee_0974	L-asparaginase I.	Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.761
asg_1	Lfee_2003	Lfee_0309	Lfee_2003	L-asparaginase I.	Aspartate aminotransferase.	0.849
asg_1	asg_2	Lfee_0309	Lfee_0573	L-asparaginase I.	L-asparaginase I.	0.577
asg_1	ggt	Lfee_0309	Lfee_0601	L-asparaginase I.	Gamma-glutamyltranspeptidase.	0.527