STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gadCGlutamate/gamma-aminobutyrate antiporter. (471 aa)    
Predicted Functional Partners:
Lfee_0635
Coiled-coil protein.
       0.800
nadE
Glutamine dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.708
Lfee_1823
Serine/threonine protein kinase.
    
 0.704
potE_1
Amino acid antiporter.
  
  
 
0.565
gadC_2
Amino acid antiporter.
  
  
 
0.558
pksJ
Polyketide synthase module.
  
 
 0.481
carB_1
Carbamoyl-phosphate synthase large subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
  
 
 0.480
tyrP_2
Tyrosine-specific transport protein.
  
   0.418
tyrP_1
Tyrosine-specific transport protein.
  
   0.417
nfdA
N-substituted formamide deformylase precursor.
       0.413
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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