Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_0669NHL repeat protein. (515 aa)    
Predicted Functional Partners:
pcp
Serine protease, subtilase family.
       0.764
tolC_1
Outer membrane efflux protein.
  
     0.542
lepB_2
Effector protein B, substrate of the Dot/Icm secretion system.
  
 
   0.512
aprE
Serine metalloprotease.
 
 
 0.498
Lfee_3052
Hypothetical protein.
  
     0.486
ftsK
Cell division protein FtsK.
    
   0.460
Lfee_0668
Hypothetical protein.
       0.453
Lfee_0540
Ankyrin repeats (3 copies).
  
     0.433
Lfee_0165
LphB.
  
     0.430
iraA_1
Small-molecule methyltransferase IraA.
  
     0.421
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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