Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gsiAABC dipeptide/oligopeptide/nickel transport, ATPase component; Belongs to the ABC transporter superfamily. (604 aa)    
Predicted Functional Partners:
dppB
Peptide ABC transporter permease.
 
 
 0.976
gsiD
Peptide ABC transporter permease.
 
 0.975
Lfee_0494
Extracellular solute-binding protein.
 
 
 0.964
Lfee_0745
Hypothetical protein.
       0.591
appA
Oligopeptide-binding protein AppA precursor.
 
 
 0.488
Lfee_2593
Hypothetical protein.
  
 
 0.453
Lfee_2596
WGR domain protein.
  
 
 0.453
Lfee_0005
UVB-resistance protein UVR8.
     
  0.428
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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