Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
yieFChromate reductase, Class I, flavoprotein. (183 aa)    
Predicted Functional Partners:
ndoR
Xylene monooxygenase.
     
  0.729
Lfee_1862
Thiamine biosynthesis protein NMT-1.
  
 
  0.677
abcT3
ABC transporter ATP binding protein.
  
 
 0.598
Lfee_0804
Phosphoadenosine phosphosulfate reductase family protein.
   
 
 0.581
Lfee_1554
Putative RNA helicase.
  
    0.518
relG
Toxin RelG.
       0.505
Lfee_0878
Ribbon-helix-helix protein, copG family.
       0.505
kynB
Metal-dependent hydrolase.
    
  0.500
ribF
Riboflavin biosynthesis protein RibF (riboflavin kinase/FMN adenylyltransferase); Belongs to the ribF family.
    
  0.500
Lfee_2006
Carbon starvation induced protein.
   
 
  0.478
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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