Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lfee_0402 | Lfee_1823 | Lfee_0402 | Lfee_1823 | Hypothetical protein. | Serine/threonine protein kinase. | 0.959 |
Lfee_0402 | apaH | Lfee_0402 | Lfee_1772 | Hypothetical protein. | Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | 0.899 |
Lfee_0402 | deaD | Lfee_0402 | Lfee_2120 | Hypothetical protein. | ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A); DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.563 |
Lfee_0402 | gmk | Lfee_0402 | Lfee_2276 | Hypothetical protein. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.711 |
Lfee_0402 | legL6_2 | Lfee_0402 | Lfee_0895 | Hypothetical protein. | Leucine-rich repeat-containing protein. | 0.852 |
Lfee_0402 | rhlE | Lfee_0402 | Lfee_3219 | Hypothetical protein. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.563 |
Lfee_0407 | Lfee_1823 | Lfee_0407 | Lfee_1823 | Hypothetical protein. | Serine/threonine protein kinase. | 0.959 |
Lfee_0407 | apaH | Lfee_0407 | Lfee_1772 | Hypothetical protein. | Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | 0.899 |
Lfee_0407 | deaD | Lfee_0407 | Lfee_2120 | Hypothetical protein. | ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A); DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.563 |
Lfee_0407 | gmk | Lfee_0407 | Lfee_2276 | Hypothetical protein. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.711 |
Lfee_0407 | legL6_2 | Lfee_0407 | Lfee_0895 | Hypothetical protein. | Leucine-rich repeat-containing protein. | 0.852 |
Lfee_0407 | rhlE | Lfee_0407 | Lfee_3219 | Hypothetical protein. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.563 |
Lfee_0448 | Lfee_1823 | Lfee_0448 | Lfee_1823 | Ras family GTPase. | Serine/threonine protein kinase. | 0.959 |
Lfee_0448 | apaH | Lfee_0448 | Lfee_1772 | Ras family GTPase. | Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | 0.899 |
Lfee_0448 | deaD | Lfee_0448 | Lfee_2120 | Ras family GTPase. | ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A); DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.563 |
Lfee_0448 | dnaK | Lfee_0448 | Lfee_2138 | Ras family GTPase. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.597 |
Lfee_0448 | gmk | Lfee_0448 | Lfee_2276 | Ras family GTPase. | Guanylate kinase; Essential for recycling GMP and indirectly, cGMP. | 0.763 |
Lfee_0448 | legL6_2 | Lfee_0448 | Lfee_0895 | Ras family GTPase. | Leucine-rich repeat-containing protein. | 0.852 |
Lfee_0448 | rhlE | Lfee_0448 | Lfee_3219 | Ras family GTPase. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.563 |
Lfee_1396 | apaH | Lfee_1396 | Lfee_1772 | RNA binding protein, cold-inducible rrm. | Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | 0.726 |
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