STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tdcBL-threonine dehydratase catabolic TdcB. (318 aa)    
Predicted Functional Partners:
Lfee_0991
Ornithine cyclodeaminase.
 
   
 0.833
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.826
pdhB_2
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.
     
 0.790
Lfee_0989
YheO-like PAS domain protein.
 
     0.775
budB
Acetolactate synthase; Belongs to the TPP enzyme family.
 
 0.702
lysAC_1
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 0.689
trpB
Tryptophan synthase subunit beta; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
 0.640
dlpA_2
DlpA protein (isocitrate and isopropylmalate dehydrogenase family protein); Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
 
 
 0.635
metB
Cystathionine beta-lyase.
 
 
 0.622
tdcG
L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
   
 
 0.596
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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