Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lfee_1043Opacity protein-like surface antigen. (211 aa)    
Predicted Functional Partners:
Lfee_1042
Opacity protein-like surface antigen.
      
0.854
rpe
D-ribulose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.754
Lfee_1044
Hypothetical protein.
       0.739
slt
Soluble lytic murein transglycosylase.
 
     0.717
dotA
Defect in organelle trafficking protein DotA.
  
     0.614
spkB_3
Protein IcmE (DotG).
  
     0.609
Lfee_1773
Putative helicase/relaxase.
  
 
   0.593
Lfee_0606
Putative membrane protein YdgA-like protein.
  
     0.587
Lfee_2699
Protein-tyrosine phosphatase.
  
     0.558
Lfee_2902
Putative virulence protein.
  
     0.531
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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