Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_1056Hypothetical protein. (393 aa)    
Predicted Functional Partners:
Lfee_3024
Hypothetical protein.
  
     0.766
Lfee_1057
Glutamate synthetase.
       0.756
Lfee_0540
Ankyrin repeats (3 copies).
  
     0.744
iraA_1
Small-molecule methyltransferase IraA.
  
     0.737
Lfee_0306
Hypothetical protein.
  
    0.731
lepB_2
Effector protein B, substrate of the Dot/Icm secretion system.
  
     0.708
Lfee_0165
LphB.
  
     0.707
Lfee_2672
Type II/III secretion system protein.
  
     0.706
Lfee_0557
Hypothetical protein.
  
     0.701
fliH
Polar flagellar assembly protein FliH.
  
     0.701
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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