STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_1063Polysaccharide biosynthesis protein. (419 aa)    
Predicted Functional Partners:
ugd
UDP-glucose 6-dehydrogenase.
  
  
 0.946
neuC
N-acylglucosamine 2-epimerase.
  
  
 0.785
Lfee_1062
Glycosyltransferase.
  
  
 0.770
galE_1
NAD dependent epimerase/dehydratase.
  
  
 0.764
pksJ
Polyketide synthase module.
  
 
 0.673
sacB_2
Capsular polysaccharide phosphotransferase cps12A.
  
 
 0.670
sacB_1
Capsular polysaccharide phosphotransferase cps12A.
  
 
 0.670
Lfee_1064
Chain length determinant protein.
  
  
 0.666
capD
Nucleoside-diphosphate sugar epimerase.
  
  
 0.650
gatC
glutamyl/tRNA (Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
  
    0.634
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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