Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lfee_1599 | barA_2 | Lfee_1599 | Lfee_0037 | GGDEF domain-containing sensory box protein. | Sensory box histidine kinase/response regulator. | 0.999 |
| Lfee_1599 | cph2_4 | Lfee_1599 | Lfee_0829 | GGDEF domain-containing sensory box protein. | Regulatory protein (GGDEF and EAL domains). | 0.995 |
| Lfee_1599 | csrA_2 | Lfee_1599 | Lfee_1086 | GGDEF domain-containing sensory box protein. | Global regulator (carbon storage regulator); A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.491 |
| Lfee_1599 | flaA | Lfee_1599 | Lfee_3147 | GGDEF domain-containing sensory box protein. | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.915 |
| Lfee_1599 | hfq | Lfee_1599 | Lfee_1835 | GGDEF domain-containing sensory box protein. | Protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.428 |
| Lfee_1599 | rho | Lfee_1599 | Lfee_1781 | GGDEF domain-containing sensory box protein. | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.502 |
| Lfee_1599 | rpoS | Lfee_1599 | Lfee_3215 | GGDEF domain-containing sensory box protein. | Stationary phase specific sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.602 |
| barA_2 | Lfee_1599 | Lfee_0037 | Lfee_1599 | Sensory box histidine kinase/response regulator. | GGDEF domain-containing sensory box protein. | 0.999 |
| barA_2 | cph2_4 | Lfee_0037 | Lfee_0829 | Sensory box histidine kinase/response regulator. | Regulatory protein (GGDEF and EAL domains). | 0.999 |
| barA_2 | csrA_2 | Lfee_0037 | Lfee_1086 | Sensory box histidine kinase/response regulator. | Global regulator (carbon storage regulator); A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.437 |
| barA_2 | flaA | Lfee_0037 | Lfee_3147 | Sensory box histidine kinase/response regulator. | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.727 |
| barA_2 | hfq | Lfee_0037 | Lfee_1835 | Sensory box histidine kinase/response regulator. | Protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.407 |
| barA_2 | rho | Lfee_0037 | Lfee_1781 | Sensory box histidine kinase/response regulator. | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.422 |
| barA_2 | rpoS | Lfee_0037 | Lfee_3215 | Sensory box histidine kinase/response regulator. | Stationary phase specific sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.456 |
| cph2_4 | Lfee_1599 | Lfee_0829 | Lfee_1599 | Regulatory protein (GGDEF and EAL domains). | GGDEF domain-containing sensory box protein. | 0.995 |
| cph2_4 | barA_2 | Lfee_0829 | Lfee_0037 | Regulatory protein (GGDEF and EAL domains). | Sensory box histidine kinase/response regulator. | 0.999 |
| cph2_4 | csrA_2 | Lfee_0829 | Lfee_1086 | Regulatory protein (GGDEF and EAL domains). | Global regulator (carbon storage regulator); A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.491 |
| cph2_4 | flaA | Lfee_0829 | Lfee_3147 | Regulatory protein (GGDEF and EAL domains). | Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.915 |
| cph2_4 | hfq | Lfee_0829 | Lfee_1835 | Regulatory protein (GGDEF and EAL domains). | Protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.428 |
| cph2_4 | rho | Lfee_0829 | Lfee_1781 | Regulatory protein (GGDEF and EAL domains). | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.502 |
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