arnC_2 protein (Legionella feeleii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

arnC_2

Lipopolysaccharide biosynthesis glycosyltransferase. (229 aa)

Predicted Functional Partners:

Lfee_0445

0.933

tycC_2

0.932

pksJ

0.897

tycC_1

0.741

grsB

0.678

arnC_3

0.669

cpsB

0.668

Lfee_2374

0.633

galE_1-2

0.570

gmhA

0.551

Your Current Organism:

Legionella feeleii

NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lfee_0445	Lfee_2374	Lfee_0445	Lfee_2374	protein-L-isoaspartate-O-methyltransferase.	Acetyltransferase.	0.578
Lfee_0445	arnC_2	Lfee_0445	Lfee_1107	protein-L-isoaspartate-O-methyltransferase.	Lipopolysaccharide biosynthesis glycosyltransferase.	0.933
Lfee_0445	cpsB	Lfee_0445	Lfee_1078	protein-L-isoaspartate-O-methyltransferase.	Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.668
Lfee_0445	grsB	Lfee_0445	Lfee_2476	protein-L-isoaspartate-O-methyltransferase.	Non-ribosomal peptide synthetase.	0.637
Lfee_0445	pksJ	Lfee_0445	Lfee_0647	protein-L-isoaspartate-O-methyltransferase.	Polyketide synthase module.	0.897
Lfee_0445	tycC_1	Lfee_0445	Lfee_0391	protein-L-isoaspartate-O-methyltransferase.	Peptide synthetase, non-ribosomal; Belongs to the ATP-dependent AMP-binding enzyme family.	0.741
Lfee_0445	tycC_2	Lfee_0445	Lfee_0691	protein-L-isoaspartate-O-methyltransferase.	Peptide synthetase, non-ribosomal.	0.932
Lfee_2374	Lfee_0445	Lfee_2374	Lfee_0445	Acetyltransferase.	protein-L-isoaspartate-O-methyltransferase.	0.578
Lfee_2374	arnC_2	Lfee_2374	Lfee_1107	Acetyltransferase.	Lipopolysaccharide biosynthesis glycosyltransferase.	0.633
Lfee_2374	cpsB	Lfee_2374	Lfee_1078	Acetyltransferase.	Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.665
Lfee_2374	galE_1-2	Lfee_2374	Lfee_1102	Acetyltransferase.	NAD dependent epimerase/dehydratase family protein.	0.543
Lfee_2374	grsB	Lfee_2374	Lfee_2476	Acetyltransferase.	Non-ribosomal peptide synthetase.	0.998
Lfee_2374	pksJ	Lfee_2374	Lfee_0647	Acetyltransferase.	Polyketide synthase module.	0.996
Lfee_2374	tycC_1	Lfee_2374	Lfee_0391	Acetyltransferase.	Peptide synthetase, non-ribosomal; Belongs to the ATP-dependent AMP-binding enzyme family.	0.991
Lfee_2374	tycC_2	Lfee_2374	Lfee_0691	Acetyltransferase.	Peptide synthetase, non-ribosomal.	0.997
arnC_2	Lfee_0445	Lfee_1107	Lfee_0445	Lipopolysaccharide biosynthesis glycosyltransferase.	protein-L-isoaspartate-O-methyltransferase.	0.933
arnC_2	Lfee_2374	Lfee_1107	Lfee_2374	Lipopolysaccharide biosynthesis glycosyltransferase.	Acetyltransferase.	0.633
arnC_2	arnC_3	Lfee_1107	Lfee_2753	Lipopolysaccharide biosynthesis glycosyltransferase.	Glycosyltransferase.	0.669
arnC_2	cpsB	Lfee_1107	Lfee_1078	Lipopolysaccharide biosynthesis glycosyltransferase.	Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.	0.668
arnC_2	galE_1-2	Lfee_1107	Lfee_1102	Lipopolysaccharide biosynthesis glycosyltransferase.	NAD dependent epimerase/dehydratase family protein.	0.570