Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
add_1Adenosine deaminase. (342 aa)    
Predicted Functional Partners:
Lfee_1201
Ankyrin repeat protein.
  
 
   0.747
Lfee_2536
Membrane protein.
  
     0.722
Lfee_2534
TraU protein.
  
     0.714
Lfee_2528
Hypothetical protein.
  
     0.706
Lfee_2490
Leucine-rich repeat-containing protein (substrate of the Dot/Icm secretion system).
  
 
   0.679
Lfee_2521
Bile acid beta-glucosidase.
  
     0.673
Lfee_1994
Protein with a bacterial immunoglobulin-like domain protein.
  
     0.664
Lfee_2530
Membrane protein.
  
     0.662
virB4
Type IV secretory protein VirB4.
  
     0.662
Lfee_2535
Tfp pilus assembly, pilus retraction ATPase PilT.
  
     0.646
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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