Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
iraA_2Small-molecule methyltransferase IraA. (268 aa)    
Predicted Functional Partners:
Lfee_1506
Hypothetical protein.
  
     0.722
Lfee_0194
Hypothetical protein.
  
     0.707
Lfee_0540
Ankyrin repeats (3 copies).
  
     0.669
Lfee_0557
Hypothetical protein.
  
     0.663
tycC_2
Peptide synthetase, non-ribosomal.
 
  
 0.633
tolC_1
Outer membrane efflux protein.
  
     0.629
aroK_1
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.618
pilZ
Type IV pilus assembly PilZ.
  
     0.603
Lfee_0165
LphB.
  
     0.598
Lfee_2672
Type II/III secretion system protein.
  
     0.596
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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