Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lfee_1443Hypothetical protein. (243 aa)    
Predicted Functional Partners:
Lfee_1444
Hypothetical protein.
       0.773
ychJ
Putative SEC-C motif domain protein.
       0.736
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.633
Lfee_0729
Hypothetical protein.
  
    0.601
gst
Glutathione S-transferase; Belongs to the GST superfamily.
    
 0.557
gor
Glutathione reductase.
    
 0.544
gstB
Glutathione S-transferase.
  
  
  0.526
hmgA
Homogentisate 1,2-dioxygenase.
 
 
 0.526
btuE
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
   
 
 0.522
lysU
Lysine tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
  0.516
Your Current Organism:
Legionella feeleii
NCBI taxonomy Id: 453
Other names: ATCC 35072, CCUG 16417, CIP 103877, DSM 17645, L. feeleii, NCTC 12022, strain WO-44C
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