Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lfee_1544 | Lfee_1547 | Lfee_1544 | Lfee_1547 | Restriction endonuclease. | Transposase ORF-A, IS-type. | 0.484 |
Lfee_1544 | fokIM | Lfee_1544 | Lfee_1546 | Restriction endonuclease. | Modification methylase FokI. | 0.739 |
Lfee_1544 | mboIIM | Lfee_1544 | Lfee_1545 | Restriction endonuclease. | Modification methylase MboII; Belongs to the N(4)/N(6)-methyltransferase family. | 0.863 |
Lfee_1547 | Lfee_1544 | Lfee_1547 | Lfee_1544 | Transposase ORF-A, IS-type. | Restriction endonuclease. | 0.484 |
Lfee_1547 | fokIM | Lfee_1547 | Lfee_1546 | Transposase ORF-A, IS-type. | Modification methylase FokI. | 0.531 |
Lfee_1547 | mboIIM | Lfee_1547 | Lfee_1545 | Transposase ORF-A, IS-type. | Modification methylase MboII; Belongs to the N(4)/N(6)-methyltransferase family. | 0.492 |
arcB_3 | lon | Lfee_0690 | Lfee_2261 | Sensory box histidine kinase/response regulator. | ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | 0.411 |
arcB_3 | mboIIM | Lfee_0690 | Lfee_1545 | Sensory box histidine kinase/response regulator. | Modification methylase MboII; Belongs to the N(4)/N(6)-methyltransferase family. | 0.485 |
dam | fokIM | Lfee_2789 | Lfee_1546 | DNA adenine methylase. | Modification methylase FokI. | 0.544 |
dam | mboIIM | Lfee_2789 | Lfee_1545 | DNA adenine methylase. | Modification methylase MboII; Belongs to the N(4)/N(6)-methyltransferase family. | 0.596 |
dcm | higA-2 | Lfee_0260 | Lfee_2592 | DNA (cytosine-5-)-methyltransferase. | Antitoxin igA-2. | 0.594 |
dcm | mboIIM | Lfee_0260 | Lfee_1545 | DNA (cytosine-5-)-methyltransferase. | Modification methylase MboII; Belongs to the N(4)/N(6)-methyltransferase family. | 0.495 |
fokIM | Lfee_1544 | Lfee_1546 | Lfee_1544 | Modification methylase FokI. | Restriction endonuclease. | 0.739 |
fokIM | Lfee_1547 | Lfee_1546 | Lfee_1547 | Modification methylase FokI. | Transposase ORF-A, IS-type. | 0.531 |
fokIM | dam | Lfee_1546 | Lfee_2789 | Modification methylase FokI. | DNA adenine methylase. | 0.544 |
fokIM | mboIIM | Lfee_1546 | Lfee_1545 | Modification methylase FokI. | Modification methylase MboII; Belongs to the N(4)/N(6)-methyltransferase family. | 0.897 |
higA-2 | dcm | Lfee_2592 | Lfee_0260 | Antitoxin igA-2. | DNA (cytosine-5-)-methyltransferase. | 0.594 |
higA-2 | mboIIM | Lfee_2592 | Lfee_1545 | Antitoxin igA-2. | Modification methylase MboII; Belongs to the N(4)/N(6)-methyltransferase family. | 0.425 |
lon | arcB_3 | Lfee_2261 | Lfee_0690 | ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | Sensory box histidine kinase/response regulator. | 0.411 |
lon | mboIIM | Lfee_2261 | Lfee_1545 | ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. | Modification methylase MboII; Belongs to the N(4)/N(6)-methyltransferase family. | 0.599 |
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